Package: AncestryMapper 2.0

AncestryMapper: Assigning Ancestry Based on Population References

Assigns genetic ancestry to an individual and studies relationships between local and global populations.

Authors:Tiago R Magalhaes, Eoghan T O'Halloran

AncestryMapper_2.0.tar.gz
AncestryMapper_2.0.zip(r-4.5)AncestryMapper_2.0.zip(r-4.4)AncestryMapper_2.0.zip(r-4.3)
AncestryMapper_2.0.tgz(r-4.4-any)AncestryMapper_2.0.tgz(r-4.3-any)
AncestryMapper_2.0.tar.gz(r-4.5-noble)AncestryMapper_2.0.tar.gz(r-4.4-noble)
AncestryMapper_2.0.tgz(r-4.4-emscripten)AncestryMapper_2.0.tgz(r-4.3-emscripten)
AncestryMapper.pdf |AncestryMapper.html✨
AncestryMapper/json (API)
NEWS

# Install 'AncestryMapper' in R:

install.packages('AncestryMapper', repos = c('https://eoh-gh.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

MinMaxFreq - Allele Variants for Demo SNPs According to dbSNP.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.
arithmeticRefsMedoids - Object each reference file is assigned as it is loaded in or read.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.15 score 14 scripts 257 downloads 1 mentions 5 exports 1 dependencies

Last updated 8 years agofrom:37498711fd. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 18 2024
R-4.5-win	NOTE	Nov 18 2024
R-4.5-linux	NOTE	Nov 18 2024
R-4.4-win	NOTE	Nov 18 2024
R-4.4-mac	NOTE	Nov 18 2024
R-4.3-win	NOTE	Nov 18 2024
R-4.3-mac	NOTE	Nov 18 2024

Exports:calculateAMids calculateAMidsArith createMedoid plotAMids refAdd

Dependencies:svd

AncestryMapper Overview

Eoghan O'Halloran, Tiago Magalhães, Darren J. Fitzpatrick

Rendered fromAncestryMapper2.0.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2016-09-28
Started: 2016-09-28

Citation

Readme and manuals

Help Manual

Help page	Topics
Ancestry Mapper 2.0	AncestryMapper
Object each reference file is assigned as it is loaded in or read.	arithmeticRefsMedoids
Calculate genetic distances.	calculateAMids
Calculate genetic distances.	calculateAMidsArith
Creates Ancestry Mapper Population Reference.	createMedoid
Allele Variants for Demo SNPs According to dbSNP.	MinMaxFreq
Visualises genetic distances.	plotAMids
Add individuals to the CorPheno file.	refAdd